MNE Pipeline

Get started

Follow these steps to use the MneExperiment pipeline:

1. Generate the root folder for your experiment. Inside, generate two folders: meg and mri.

2. Convert data to *.fif files (see KIT-to-FIFF-Conversion), saving the files using the following path template: {root}/meg/{subject}/{subject}_{session}-raw.fif.

3. For source space analysis, generate structural brain models in the mri directory:

   • With a subject-specific structural MRI available: Coregistration: Structural MRI

   • Using a template brain: Coregistration: Template Brain

4. Follow the Step by step guide for setting up the Experiment class.

   • Some more specific MneExperiment-analysis-options.

Implementation details

• MneExperiment-Epochs

• Cache-Folder — where MneExperiment stores intermediate files