From 616a5267de6ce53a95aed131fe857be1847ad3f2 Mon Sep 17 00:00:00 2001
From: muxator <antonio.muci@bancaditalia.it>
Date: Sat, 24 Feb 2024 10:41:54 +0100
Subject: [PATCH] env: introduce support for python 3.12, but drop support for
 python 3.8 due to scipy

As of 2024-02, Python 3.8 is still going to be supproted for 6 months (until
2024-10, see https://devguide.python.org/versions).

At the same time, Python 3.12 was released four months ago, on 2023-10, and will
be supported for five years.

We cannot support both, because scipy 1.10 does not work with python 3.12, and
scipy 1,11 drops python 3.8.

Having to make a choiche, it is probably better to go with the more recent
versions, thus 3.8 has to go down the drain.
---
 poetry.lock    | 922 +++++++++++++++++++++----------------------------
 pyproject.toml |   6 +-
 tox.ini        |   6 +-
 3 files changed, 393 insertions(+), 541 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 01b39371..bfac0228 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -127,21 +127,6 @@ six = ">=1.12.0"
 astroid = ["astroid (>=1,<2)", "astroid (>=2,<4)"]
 test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"]
 
-[[package]]
-name = "astunparse"
-version = "1.6.3"
-description = "An AST unparser for Python"
-optional = false
-python-versions = "*"
-files = [
-    {file = "astunparse-1.6.3-py2.py3-none-any.whl", hash = "sha256:c2652417f2c8b5bb325c885ae329bdf3f86424075c4fd1a128674bc6fba4b8e8"},
-    {file = "astunparse-1.6.3.tar.gz", hash = "sha256:5ad93a8456f0d084c3456d059fd9a92cce667963232cbf763eac3bc5b7940872"},
-]
-
-[package.dependencies]
-six = ">=1.6.1,<2.0"
-wheel = ">=0.23.0,<1.0"
-
 [[package]]
 name = "async-lru"
 version = "2.0.4"
@@ -186,23 +171,9 @@ files = [
     {file = "Babel-2.14.0.tar.gz", hash = "sha256:6919867db036398ba21eb5c7a0f6b28ab8cbc3ae7a73a44ebe34ae74a4e7d363"},
 ]
 
-[package.dependencies]
-pytz = {version = ">=2015.7", markers = "python_version < \"3.9\""}
-
 [package.extras]
 dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
 
-[[package]]
-name = "backcall"
-version = "0.2.0"
-description = "Specifications for callback functions passed in to an API"
-optional = false
-python-versions = "*"
-files = [
-    {file = "backcall-0.2.0-py2.py3-none-any.whl", hash = "sha256:fbbce6a29f263178a1f7915c1940bde0ec2b2a967566fe1c65c1dfb7422bd255"},
-    {file = "backcall-0.2.0.tar.gz", hash = "sha256:5cbdbf27be5e7cfadb448baf0aa95508f91f2bbc6c6437cd9cd06e2a4c215e1e"},
-]
-
 [[package]]
 name = "bandit"
 version = "1.7.7"
@@ -327,46 +298,57 @@ css = ["tinycss2 (>=1.1.0,<1.3)"]
 
 [[package]]
 name = "blosc2"
-version = "2.0.0"
-description = "Python wrapper for the C-Blosc2 library."
-optional = false
-python-versions = ">=3.8, <4"
-files = [
-    {file = "blosc2-2.0.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:4085e5c1df186e1747d8a8578b0cc1c8b7668391d635e9f89e17156912fba85a"},
-    {file = "blosc2-2.0.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:cec4c0570543921ce6b8c9ffdbf9f2170de37ecaf8e2b213e867e3130b81f205"},
-    {file = "blosc2-2.0.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:1fbecd7ef4876811719aa58d84e4b414f430f329162c18578b870f5e77b59864"},
-    {file = "blosc2-2.0.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:96dd63eb7641594208e6a865fd60a0bdde24568a180180beb8af4d6608796f3a"},
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-    {file = "blosc2-2.0.0-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:6545d6d7e7365a2a3533d4bdf7095856443aed7d5ddc577ecd0e78083790bff1"},
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-    {file = "blosc2-2.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:ea3396de7757092d502fb297a44a8d019d92e750e5aebcd9d39a157fde8785b3"},
-    {file = "blosc2-2.0.0-cp39-cp39-win_amd64.whl", hash = "sha256:ef018926b55799cf23345127dde8f29356b4451b3e067e1b07f0d186213bd821"},
-    {file = "blosc2-2.0.0.tar.gz", hash = "sha256:f19b0b3674f6c825b490f00d8264b0c540c2cdc11ec7e81178d38b83c57790a1"},
+version = "2.5.1"
+description = "Python wrapper for the C-Blosc2 library"
+optional = false
+python-versions = "<4,>=3.8"
+files = [
+    {file = "blosc2-2.5.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:c861262b7fe317c1614a9b59b6c9edf409532b4a6aaf5b2f4ad0d79c6f800b57"},
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+    {file = "blosc2-2.5.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:5455af77e7e94159bb4966cae554f232ca2d52bb80cd3f878ecef39cf569da2a"},
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+    {file = "blosc2-2.5.1.tar.gz", hash = "sha256:47d5df50e7286edf81e629ece35f87f13f55c13c5e8545832188c420c75d1659"},
 ]
 
 [package.dependencies]
 msgpack = "*"
+ndindex = ">=1.4"
+numpy = ">=1.20.3"
+py-cpuinfo = "*"
 
 [[package]]
 name = "bokeh"
-version = "3.1.1"
+version = "3.3.4"
 description = "Interactive plots and applications in the browser from Python"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
-    {file = "bokeh-3.1.1-py3-none-any.whl", hash = "sha256:a542a076ce326f81bf6d226355458572d39fe8fc9b547eab9728a2f1d71e4bdb"},
-    {file = "bokeh-3.1.1.tar.gz", hash = "sha256:ba0fc6bae4352d307541293256dee930a42d0acf92e760c72dc0e7397c3a28e9"},
+    {file = "bokeh-3.3.4-py3-none-any.whl", hash = "sha256:ad7b6f89d0a7c2be01eff1db0ca24e2755ac41de14539db919a62e791809c309"},
+    {file = "bokeh-3.3.4.tar.gz", hash = "sha256:73b7982dc2b8df15bf660cdddc8d3825e829195c438015a5d09824f1a7028368"},
 ]
 
 [package.dependencies]
@@ -646,74 +628,66 @@ test = ["pytest"]
 
 [[package]]
 name = "contourpy"
-version = "1.1.1"
+version = "1.2.0"
 description = "Python library for calculating contours of 2D quadrilateral grids"
 optional = false
-python-versions = ">=3.8"
-files = [
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 [package.dependencies]
@@ -805,43 +779,43 @@ toml = ["tomli"]
 
 [[package]]
 name = "cryptography"
-version = "42.0.4"
+version = "42.0.5"
 description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
 optional = false
 python-versions = ">=3.7"
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 ]
 
 [package.dependencies]
@@ -872,73 +846,6 @@ files = [
 docs = ["ipython", "matplotlib", "numpydoc", "sphinx"]
 tests = ["pytest", "pytest-cov", "pytest-xdist"]
 
-[[package]]
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-
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 name = "darglint"
 version = "1.8.1"
@@ -1370,13 +1277,13 @@ tests = ["freezegun", "pytest", "pytest-cov"]
 
 [[package]]
 name = "hypothesis"
-version = "6.98.10"
+version = "6.98.11"
 description = "A library for property-based testing"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
@@ -1551,42 +1458,40 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio
 
 [[package]]
 name = "ipython"
-version = "8.12.3"
+version = "8.18.1"
 description = "IPython: Productive Interactive Computing"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
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-backcall = "*"
 colorama = {version = "*", markers = "sys_platform == \"win32\""}
 decorator = "*"
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 jedi = ">=0.16"
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 pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""}
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 pygments = ">=2.4.0"
 stack-data = "*"
 traitlets = ">=5"
 typing-extensions = {version = "*", markers = "python_version < \"3.10\""}
 
 [package.extras]
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 nbconvert = ["nbconvert"]
 nbformat = ["nbformat"]
 notebook = ["ipywidgets", "notebook"]
 parallel = ["ipyparallel"]
 qtconsole = ["qtconsole"]
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+test = ["pickleshare", "pytest (<7.1)", "pytest-asyncio (<0.22)", "testpath"]
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 [[package]]
 name = "ipyvue"
@@ -1798,11 +1703,9 @@ files = [
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 fqdn = {version = "*", optional = true, markers = "extra == \"format-nongpl\""}
 idna = {version = "*", optional = true, markers = "extra == \"format-nongpl\""}
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 isoduration = {version = "*", optional = true, markers = "extra == \"format-nongpl\""}
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 rfc3986-validator = {version = ">0.1.0", optional = true, markers = "extra == \"format-nongpl\""}
@@ -1826,7 +1729,6 @@ files = [
 ]
 
 [package.dependencies]
-importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
 referencing = ">=0.31.0"
 
 [[package]]
@@ -2026,7 +1928,6 @@ files = [
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 httpx = ">=0.25.0"
 importlib-metadata = {version = ">=4.8.3", markers = "python_version < \"3.10\""}
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 ipykernel = "*"
 jinja2 = ">=3.0.3"
 jupyter-core = "*"
@@ -2106,7 +2007,6 @@ files = [
 
 [package.dependencies]
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-importlib-resources = {version = "*", markers = "python_version < \"3.9\""}
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 jeepney = {version = ">=0.4.2", markers = "sys_platform == \"linux\""}
 pywin32-ctypes = {version = ">=0.2.0", markers = "sys_platform == \"win32\""}
@@ -2380,58 +2280,39 @@ tests = ["pytest", "pytz", "simplejson"]
 
 [[package]]
 name = "matplotlib"
-version = "3.7.5"
+version = "3.8.3"
 description = "Python plotting package"
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-python-versions = ">=3.8"
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 ]
 
 [package.dependencies]
@@ -2439,10 +2320,10 @@ contourpy = ">=1.0.1"
 cycler = ">=0.10"
 fonttools = ">=4.22.0"
 importlib-resources = {version = ">=3.2.0", markers = "python_version < \"3.10\""}
-kiwisolver = ">=1.0.1"
-numpy = ">=1.20,<2"
+kiwisolver = ">=1.3.1"
+numpy = ">=1.21,<2"
 packaging = ">=20.0"
-pillow = ">=6.2.0"
+pillow = ">=8"
 pyparsing = ">=2.3.1"
 python-dateutil = ">=2.7"
 
@@ -2484,13 +2365,13 @@ files = [
 
 [[package]]
 name = "mesa"
-version = "2.1.5"
-description = "Agent-based modeling (ABM) in Python 3+"
+version = "2.2.4"
+description = "Agent-based modeling (ABM) in Python"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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 ]
 
 [package.dependencies]
@@ -2506,7 +2387,7 @@ tqdm = "*"
 
 [package.extras]
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-docs = ["ipykernel", "ipython", "myst-nb", "myst-parser", "pydata-sphinx-theme", "seaborn", "sphinx"]
+docs = ["ipython", "myst-nb", "myst-parser", "pydata-sphinx-theme", "seaborn", "sphinx"]
 
 [[package]]
 name = "mesa-viz-tornado"
@@ -2595,13 +2476,13 @@ mkdocs = ">=1.1"
 
 [[package]]
 name = "mkdocs-material"
-version = "9.5.10"
+version = "9.5.11"
 description = "Documentation that simply works"
 optional = false
 python-versions = ">=3.8"
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 ]
 
 [package.dependencies]
@@ -2923,6 +2804,20 @@ nbformat = ">=5.0.8,<6.0.0"
 Pygments = ">=2.7.3,<3.0.0"
 pytest = ">=6.1.0"
 
+[[package]]
+name = "ndindex"
+version = "1.8"
+description = "A Python library for manipulating indices of ndarrays."
+optional = false
+python-versions = ">=3.8"
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+
+[package.extras]
+arrays = ["numpy"]
+
 [[package]]
 name = "ndlib"
 version = "5.1.1"
@@ -2972,21 +2867,21 @@ python-igraph = "*"
 
 [[package]]
 name = "networkx"
-version = "3.1"
+version = "3.2.1"
 description = "Python package for creating and manipulating graphs and networks"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
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+test = ["pytest (>=7.2)", "pytest-cov (>=4.0)"]
 
 [[package]]
 name = "nh3"
@@ -3055,41 +2950,40 @@ test = ["pytest", "pytest-console-scripts", "pytest-jupyter", "pytest-tornasync"
 
 [[package]]
 name = "numexpr"
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+version = "2.9.0"
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+    {file = "tables-3.9.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:e756c272bb111d016fec1d03a60095403a8fb42a5fbaf5f317dcf6e3b9d8e92e"},
+    {file = "tables-3.9.2-cp310-cp310-win_amd64.whl", hash = "sha256:eea41cb32dd22b30d6f3dd4e113f6d693384d301c89f3c4b4712f90c9c955875"},
+    {file = "tables-3.9.2-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:d71913fb8147dc6132595b94fc82f88f6c2436a3b5c57aadfe26c680f96aa387"},
+    {file = "tables-3.9.2-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:9d6bbc477d038a17c5062ab6ccd94c8b1fa365cf017b9a2ad6c2dff1a07abb2b"},
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+    {file = "tables-3.9.2-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:2848fb3dce30a7b83fa099d026a91d7b10ad48afae04fa10f974f1da3f1e2bbf"},
+    {file = "tables-3.9.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:b131c9b4e003816a45e2efe5c5c797d01d8308cac4aee72597a15837cedb605c"},
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+    {file = "tables-3.9.2-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:c52087ed8b90a5f6ba87f0adcd1c433e5f5db7c7ca5984b08ff45f2247635f7d"},
+    {file = "tables-3.9.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:164b945d0cb731c7232775fd3657f150bcf05413928b86033b023a1dc8dbeb05"},
+    {file = "tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:a068d4ad08d5a6b2ad457f60ac6676efdab9e29459e776e433d5537a46e62e41"},
+    {file = "tables-3.9.2-cp39-cp39-win_amd64.whl", hash = "sha256:bca5a6bf162a84a6ef74ca4017b28c59c1526cffdbd93ce94c98ff8f9593f1d5"},
+    {file = "tables-3.9.2.tar.gz", hash = "sha256:d470263c2e50c4b7c8635a0d99ac1ff2f9e704c24d71e5fa33c4529e7d0ad9c3"},
+]
+
+[package.dependencies]
+blosc2 = ">=2.3.0"
 numexpr = ">=2.6.2"
 numpy = ">=1.19.0"
 packaging = "*"
 py-cpuinfo = "*"
 
 [package.extras]
-doc = ["ipython", "numpydoc", "sphinx (>=1.1)", "sphinx-rtd-theme"]
+doc = ["ipython", "numpydoc", "sphinx (>=1.1,<6)", "sphinx-rtd-theme"]
 
 [[package]]
 name = "terminado"
@@ -5545,20 +5411,6 @@ files = [
     {file = "websockets-12.0.tar.gz", hash = "sha256:81df9cbcbb6c260de1e007e58c011bfebe2dafc8435107b0537f393dd38c8b1b"},
 ]
 
-[[package]]
-name = "wheel"
-version = "0.42.0"
-description = "A built-package format for Python"
-optional = false
-python-versions = ">=3.7"
-files = [
-    {file = "wheel-0.42.0-py3-none-any.whl", hash = "sha256:177f9c9b0d45c47873b619f5b650346d632cdc35fb5e4d25058e09c9e581433d"},
-    {file = "wheel-0.42.0.tar.gz", hash = "sha256:c45be39f7882c9d34243236f2d63cbd58039e360f85d0913425fbd7ceea617a8"},
-]
-
-[package.extras]
-test = ["pytest (>=6.0.0)", "setuptools (>=65)"]
-
 [[package]]
 name = "widgetsnbextension"
 version = "4.0.10"
@@ -5625,5 +5477,5 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p
 
 [metadata]
 lock-version = "2.0"
-python-versions = ">=3.8,<3.12"
-content-hash = "2d0fc06b1f42c31f7cabc0beddd0f47f77730586ac38251392eda82bd4c43586"
+python-versions = ">=3.9,<3.13"
+content-hash = "912471467b0bef26590a382f37855049c55ae807782529b6e6e3d2680ec749a2"
diff --git a/pyproject.toml b/pyproject.toml
index c8364c8c..f44389cf 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -27,10 +27,10 @@ classifiers = [
     'License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)',
     'Natural Language :: English',
     'Programming Language :: Python :: 3',
-    'Programming Language :: Python :: 3.8',
     'Programming Language :: Python :: 3.9',
     'Programming Language :: Python :: 3.10',
     'Programming Language :: Python :: 3.11',
+    'Programming Language :: Python :: 3.12',
     'Topic :: Scientific/Engineering'
 ]
 
@@ -39,7 +39,7 @@ classifiers = [
 "Pull Requests" = "https://github.com/bancaditalia/black-it/pulls"
 
 [tool.poetry.dependencies]
-python = ">=3.8,<3.12"
+python = ">=3.9,<3.13"
 ipywidgets = "^8.1.2"
 matplotlib = "^3.7.3"
 numpy = ">=1.24.4,<1.25.0"
@@ -49,7 +49,7 @@ seaborn = "^0.12.2"
 statsmodels = "^0.13.2"
 tables = "^3.8.0"
 xgboost = "^1.7.6"
-scipy = "^1.10.1"
+scipy = "^1.11.4"
 joblib = "^1.3.2"
 gymnasium = "^0.27.1"
 
diff --git a/tox.ini b/tox.ini
index 7ac942b5..0aa6108d 100644
--- a/tox.ini
+++ b/tox.ini
@@ -1,6 +1,6 @@
 [tox]
 isolated_build = True
-envlist = bandit, safety, check-copyright, black-check, vulture, mypy, py3{8,9,10,11}, docs
+envlist = bandit, safety, check-copyright, black-check, vulture, mypy, py3{9,10,11,12}, docs
 
 [tox:.package]
 # note tox will use the same python version as under what tox is installed to package
@@ -29,12 +29,12 @@ commands =
         --cov-report=html \
         --cov-report=term {posargs}
 
-[testenv:py{38,39,310,311}]
+[testenv:py{39,310,311,312}]
 commands =
     {[testenv]commands}
 
 # test environment for notebooks
-[testenv:py{38,39,310,311}-nb]
+[testenv:py{39,310,311,312}-nb]
 deps =
     pytest==7.4.2
     mesa==2.1.1