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LEMS_GranuleCell.xml
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LEMS_GranuleCell.xml
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<Lems xmlns="http://www.neuroml.org/lems/0.7.2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/lems/0.7.2 https://raw.github.com/LEMS/LEMS/development/Schemas/LEMS/LEMS_v0.7.2.xsd">
<Target component="sim1" reportFile="simulator.props" timesFile="time.dat"/>
<!--Include standard NeuroML 2 ComponentType definitions-->
<Include file="Cells.xml"/>
<Include file="Networks.xml"/>
<Include file="Simulation.xml"/>
<!--Include the generated NeuroML 2 files-->
<!-- Channel/synapse files-->
<Include file="Gran_CaHVA_98.channel.nml"/>
<Include file="Gran_CaPool_98.nml"/>
<Include file="Gran_H_98.channel.nml"/>
<Include file="Gran_KA_98.channel.nml"/>
<Include file="Gran_KCa_98.channel.nml"/>
<Include file="Gran_KDr_98.channel.nml"/>
<Include file="Gran_NaF_98.channel.nml"/>
<Include file="GranPassiveCond.channel.nml"/>
<!-- Cell files-->
<Include file="Granule_98.cell.nml"/>
<!-- Network file-->
<Include file="GranuleCell.net.nml"/>
<!--Note: this could be: Simulation id="sim1" ... , but Component type="Simulation" ...
is used to allow validation of this file according to the LEMS schema specified above...-->
<Component type="Simulation" id="sim1" length="700.0ms" step="0.01ms" target="network_GranuleCell">
<Display id="GraphWin_0" title="GranuleCell: Default Simulation Configuration, Gran, VOLTAGE" xmin="-70.0" xmax="770.0" ymin="-104.0" ymax="64.0" timeScale="1ms">
<Line id="VOLTAGE" timeScale="1ms" quantity="Gran/0/Granule_98/v" scale="1 mV" color="#000000"/>
</Display>
<Display id="GraphWin_1" title="GranuleCell: Default Simulation Configuration, Gran, Gran_H_98:n, Gran_NaF_98:h, Gran_KDr_98:h, Gran_KCa_98:m, Gran_KA_98:m, Gran_KA_98:h, Gran_NaF_98:m, Gran_CaHVA_98:m, Gran_CaHVA_98:h" xmin="-70.0" xmax="770.0" ymin="-0.1" ymax="1.1" timeScale="1ms">
<Line id="Gran_H_98_n" timeScale="1ms" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_H_98_all/Gran_H_98/n/q" scale="1" color="#000000"/>
<Line id="Gran_NaF_98_h" timeScale="1ms" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_NaF_98_all/Gran_NaF_98/h/q" scale="1" color="#ff0000"/>
<Line id="Gran_KDr_98_h" timeScale="1ms" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_KDr_98_all/Gran_KDr_98/h/q" scale="1" color="#0000ff"/>
<Line id="Gran_KCa_98_m" timeScale="1ms" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_KCa_98_all/Gran_KCa_98/m/q" scale="1" color="#009b00"/>
<Line id="Gran_KA_98_m" timeScale="1ms" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_KA_98_all/Gran_KA_98/m/q" scale="1" color="#ffc800"/>
<Line id="Gran_KA_98_h" timeScale="1ms" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_KA_98_all/Gran_KA_98/h/q" scale="1" color="#8c6400"/>
<Line id="Gran_NaF_98_m" timeScale="1ms" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_NaF_98_all/Gran_NaF_98/m/q" scale="1" color="#ff00ff"/>
<Line id="Gran_CaHVA_98_m" timeScale="1ms" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_CaHVA_98_all/Gran_CaHVA_98/m/q" scale="1" color="#ffff00"/>
<Line id="Gran_CaHVA_98_h" timeScale="1ms" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_CaHVA_98_all/Gran_CaHVA_98/h/q" scale="1" color="#808080"/>
</Display>
<Display id="GraphWin_2" title="GranuleCell: Default Simulation Configuration, Gran, Gran_CaPool_98:CONC:ca" xmin="-70.0" xmax="770.0" ymin="-1.9999999E-10" ymax="2.2E-9" timeScale="1ms">
<Line id="Gran_CaPool_98_CONC_ca" timeScale="1ms" quantity="Gran/0/Granule_98/caConc" scale="1 mol_per_cm3" color="#000000"/>
</Display>
<OutputFile id="Gran_v_OF" fileName="Gran_0.dat">
<OutputColumn id="v" quantity="Gran/0/Granule_98/v"/>
</OutputFile>
<OutputFile id="Plot_1_OF" fileName="Gran_0.Gran_H_98_n.dat">
<OutputColumn id="q" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_H_98_all/Gran_H_98/n/q"/>
</OutputFile>
<OutputFile id="Plot_12_OF" fileName="Gran_0.Gran_NaF_98_h.dat">
<OutputColumn id="q" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_NaF_98_all/Gran_NaF_98/h/q"/>
</OutputFile>
<OutputFile id="Plot_2_OF" fileName="Gran_0.Gran_KDr_98_h.dat">
<OutputColumn id="q" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_KDr_98_all/Gran_KDr_98/h/q"/>
</OutputFile>
<OutputFile id="Plot_3_OF" fileName="Gran_0.Gran_KCa_98_m.dat">
<OutputColumn id="q" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_KCa_98_all/Gran_KCa_98/m/q"/>
</OutputFile>
<OutputFile id="Plot_4_OF" fileName="Gran_0.Gran_KA_98_m.dat">
<OutputColumn id="q" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_KA_98_all/Gran_KA_98/m/q"/>
</OutputFile>
<OutputFile id="Plot_5_OF" fileName="Gran_0.Gran_KA_98_h.dat">
<OutputColumn id="q" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_KA_98_all/Gran_KA_98/h/q"/>
</OutputFile>
<OutputFile id="Plot_6_OF" fileName="Gran_0.Gran_NaF_98_m.dat">
<OutputColumn id="q" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_NaF_98_all/Gran_NaF_98/m/q"/>
</OutputFile>
<OutputFile id="Plot_7_OF" fileName="Gran_0.Gran_CaHVA_98_m.dat">
<OutputColumn id="q" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_CaHVA_98_all/Gran_CaHVA_98/m/q"/>
</OutputFile>
<OutputFile id="Plot_8_OF" fileName="Gran_0.Gran_CaHVA_98_h.dat">
<OutputColumn id="q" quantity="Gran/0/Granule_98/biophys/membraneProperties/Gran_CaHVA_98_all/Gran_CaHVA_98/h/q"/>
</OutputFile>
<OutputFile id="Var_0_OF" fileName="Gran_0.Gran_CaPool_98_CONC_ca.dat">
<OutputColumn id="caConc" quantity="Gran/0/Granule_98/caConc"/>
</OutputFile>
</Component>
</Lems>