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I consistently get a segmentation fault on step 1 of a stepping stone analysis with unlinked topology. The dataset runs fine with the exact same settings if topology is linked.
What is the current observed behaviour?
The analysis seems to start fine, but I get the following error half way through sampling step 1:
*** Process received signal ***
Signal: Segmentation fault: 11 (11)
Signal code: Invalid permissions (2)
Failing at address: 0x0
[ 0] 0 libsystem_platform.dylib
This occurs regardless of the number of cores I specify. I have tried this on a linux and mac machine using the latest installation of MrBayes and get the same error. The analysis runs to completion if topology is linked between partitions.
What is the expected/wanted behaviour?
I need the unlinked topology analysis to run to completion.
I consistently get a segmentation fault on step 1 of a stepping stone analysis with unlinked topology. The dataset runs fine with the exact same settings if topology is linked.
What is the current observed behaviour?
The analysis seems to start fine, but I get the following error half way through sampling step 1:
*** Process received signal ***
Signal: Segmentation fault: 11 (11)
Signal code: Invalid permissions (2)
Failing at address: 0x0
[ 0] 0 libsystem_platform.dylib
This occurs regardless of the number of cores I specify. I have tried this on a linux and mac machine using the latest installation of MrBayes and get the same error. The analysis runs to completion if topology is linked between partitions.
What is the expected/wanted behaviour?
I need the unlinked topology analysis to run to completion.
How may we reproduce this bug?
Steps to reproduce the bug:
MB.zip
Would you be able to compile and run MrBayes to test fixes to this bug?
git
and how to compile MrBayes.What is the environment that you run MrBayes in?
Version
command in MrBayes below:(for Mac)
Other information that may be of use to us in resolving this issue
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