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Output files(.snp, .haplotype) of hisat2_extract_snps_haplotypes_*.py are empty #414

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jim83830 opened this issue Jul 13, 2023 · 0 comments
Open

Output files(.snp, .haplotype) of hisat2_extract_snps_haplotypes_*.py are empty #414

jim83830 opened this issue Jul 13, 2023 · 0 comments

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@jim83830
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We encountered an issue where the output files (.snp and .haplotype) generated by the hisat2_extract_snps_haplotypes_UCSC.py and hisat2_extract_snps_haplotypes_VCF.py commands were empty, despite following the provided instructions and using the updated SNP database file (snp151Common.txt). We are currently investigating the cause of this problem and working on finding a solution.
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