From 5d8070789c8933eaa2fe0059c9430b1bc6ec2f6f Mon Sep 17 00:00:00 2001
From: CodeGat <tommy.gatti@outlook.com>
Date: Sat, 9 Feb 2019 18:15:55 +1100
Subject: [PATCH 1/2] Prefix definition can be of form: 'a ?: ?e' where 'a' is
 acronym and 'e' is expansion.

---
 src/controller/PrefixMenuController.java | 18 ++++++++++--------
 1 file changed, 10 insertions(+), 8 deletions(-)

diff --git a/src/controller/PrefixMenuController.java b/src/controller/PrefixMenuController.java
index 2c7fabd..3c5b74f 100644
--- a/src/controller/PrefixMenuController.java
+++ b/src/controller/PrefixMenuController.java
@@ -72,10 +72,10 @@ public class PrefixMenuController extends AbstractDataSharingController<Map<Stri
         String[] newPrefixes = prefixResult.split(", ");
 
         for (String prefix : newPrefixes){
-            if (prefix.matches("[a-z]* : .*")) {
-                String[] prefixParts = prefix.split(" : ");
-                String   acronym = prefixParts[0];
-                String   expansion = prefixParts[1];
+            if (prefix.matches("[a-z]* ?: ?.*")) {
+                String[] prefixParts = prefix.split(":", 2);
+                String   acronym = prefixParts[0].trim();
+                String   expansion = prefixParts[1].trim();
 
                 prefixes.put(acronym, expansion);
                 prefixList.getItems().add(prefix);
@@ -89,7 +89,7 @@ public class PrefixMenuController extends AbstractDataSharingController<Map<Stri
      */
     @FXML void removePrefixAction() {
         String prefix = prefixList.getSelectionModel().getSelectedItem();
-        prefixes.remove(prefix.split(" : ")[0]);
+        prefixes.remove(prefix.split(":", 1)[0].trim());
         prefixList.getItems().remove(prefix);
         prefixList.getSelectionModel().clearSelection();
     }
@@ -146,10 +146,12 @@ public class PrefixMenuController extends AbstractDataSharingController<Map<Stri
                 if (reader.read(rawPrefixes) == 0) LOGGER.warning("Nothing in prefix file. ");
                 String[] strPrefixes = new String(rawPrefixes).trim().split("\\n");
                 for (String strPrefix : strPrefixes) {
-                    String[] prefixParts = strPrefix.split(" : ");
+                    String[] prefixParts = strPrefix.split(":", 2);
+                    String   acronym = prefixParts[0].trim();
+                    String   expansion = prefixParts[1].trim();
 
-                    if (!prefixes.containsKey(prefixParts[0])) {
-                        prefixes.put(prefixParts[0], prefixParts[1]);
+                    if (!prefixes.containsKey(acronym)) {
+                        prefixes.put(acronym, expansion);
                         prefixList.getItems().add(strPrefix);
                     }
                 }

From 90ba5ae34a67a755c381dd05a6e558b8e240d1d6 Mon Sep 17 00:00:00 2001
From: CodeGat <tommy.gatti@outlook.com>
Date: Sat, 9 Feb 2019 18:45:43 +1100
Subject: [PATCH 2/2] Fixed attempted correlation of .csv headers and .ttl
 classes not finding equal strings - failed due to \uFEFF being prepended to
 .csv headers.

---
 src/model/dataintegration/DataIntegrator.java | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/src/model/dataintegration/DataIntegrator.java b/src/model/dataintegration/DataIntegrator.java
index 9bc54a5..47a2c28 100644
--- a/src/model/dataintegration/DataIntegrator.java
+++ b/src/model/dataintegration/DataIntegrator.java
@@ -245,10 +245,13 @@ public void attemptCorrelationOfHeaders(){
 
         for (Entry<String, Integer> header : headers.entrySet()){
             for (Vertex klass : classes){
-                boolean isExactMatch = header.getKey().equals(klass.getName());
+                String headerComparable =
+                        header.getKey().charAt(0) == '\uFEFF' ? header.getKey().substring(1) : header.getKey();
+
+                boolean isExactMatch = headerComparable.equals(klass.getName());
                 boolean isCloseMatch = !klass.isIri()
                         && klass.getElementType() == CLASS
-                        && header.getKey().equalsIgnoreCase(klass.getName().split(":", 2)[1]);
+                        && headerComparable.equalsIgnoreCase(klass.getName().split(":", 2)[1]);
 
                 if (isExactMatch || isCloseMatch){
                     csvTtlCorrelations.add(new Correlation(header.getValue(), header.getKey(), klass));