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Describe the bug I used the function mentioned in the issue header to parse obo files for SwateDB and noticed that i have some duplicate entries:
Example:
Now i checked into it and found out that most are created due to parsing errors as can be seen here:
If you check the accession numbers, e.g.:
http://purl.obolibrary.org/obo/MS_1001151 http://purl.obolibrary.org/obo/MS_1001261
the problem seems to involve ':' as part of the ontology term name.
To Reproduce Steps to reproduce the behavior:
codesnippet:
let msOntologyTerms = __SOURCE_DIRECTORY__ + @"/../../ms.obo" |> Seq.fromFile |> parseOboTerms |> Array.ofSeq
Expected behavior Should parse term name correctly or throw error.
The text was updated successfully, but these errors were encountered:
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Describe the bug
I used the function mentioned in the issue header to parse obo files for SwateDB and noticed that i have some duplicate entries:
Example:
Now i checked into it and found out that most are created due to parsing errors as can be seen here:
If you check the accession numbers, e.g.:
http://purl.obolibrary.org/obo/MS_1001151
http://purl.obolibrary.org/obo/MS_1001261
the problem seems to involve ':' as part of the ontology term name.
To Reproduce
Steps to reproduce the behavior:
codesnippet:
Expected behavior
Should parse term name correctly or throw error.
The text was updated successfully, but these errors were encountered: