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<!DOCTYPE HTML><html><head><title>Clotho RestAPI API documentation</title><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta http-equiv="Content-Type" content="text/html; charset=utf-8"><meta name="generator" content="https://github.com/raml2html/raml2html 6.1.1"><link rel="stylesheet" href="https://netdna.bootstrapcdn.com/bootstrap/3.1.1/css/bootstrap.min.css"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.3.0/styles/default.min.css"><script type="text/javascript" src="https://code.jquery.com/jquery-1.11.0.min.js"></script><script type="text/javascript" src="https://netdna.bootstrapcdn.com/bootstrap/3.1.1/js/bootstrap.min.js"></script><script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.3.0/highlight.min.js"></script><script type="text/javascript">
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</style></head><body data-spy="scroll" data-target="#sidebar"><div class="container"><div class="row"><div class="col-md-9" role="main"><div class="page-header"><h1>Clotho RestAPI API documentation <small>version 1</small></h1><p>http://example.com/{version}</p><ul><li><strong>version</strong>: <em>required (1)</em></li></ul><h3 id="clotho_rest_api"><a href="#clotho_rest_api">Clotho REST API</a></h3><p>This is the basic documentation for Clotho Rest API framework. It has the following methods: (based on example curl requests)</p><ul><li>homepage: direct the user to Clotho homepage</li><li>createUser: create a user for Clotho</li><li>createSequence: create a DNA/RNA sequence for Clotho to query</li><li>createPart: create part of an existing sequence</li><li>createConveniencePart: create part of an existing sequence using a convenience method in the class file: Convenience.java</li><li>getById: get a user profile / object by id</li><li>getByName: get a user profile / object by name</li><li>set: a put method that sets the profile</li><li>delete: a delete method that deletes a profile<h1 id="generic-example-site-to-show-where-the-html-is-generated">generic example site to show where the HTML is generated</h1></li><li><a href="https://www.example.com">example.com</a>.</li></ul></div><div class="panel panel-default"><div class="panel-heading"><h3 id="arguments" class="panel-title">/arguments</h3></div><div class="panel-body"><div class="panel-group"><div class="panel panel-white resource-modal"><div class="panel-heading"><h4 class="panel-title"><a class="collapsed" data-toggle="collapse" href="#panel_arguments"><span class="parent"></span>/arguments</a> <span class="methods"><a href="#arguments_get"><span class="badge badge_get">get</span></a></span></h4></div><div id="panel_arguments" class="panel-collapse collapse"><div class="panel-body"><div class="list-group"><div onclick="window.location.href = '#arguments_get'" class="list-group-item"><span class="badge badge_get">get</span><div class="method_description"></div><div class="clearfix"></div></div></div></div></div><div class="modal fade" tabindex="0" id="arguments_get"><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button><h4 class="modal-title" id="myModalLabel"><span class="badge badge_get">get</span> <span class="parent"></span>/arguments</h4></div><div class="modal-body"><ul class="nav nav-tabs"><li class="active"><a href="#arguments_get_response" data-toggle="tab">Response</a></li></ul><div class="tab-content"><div class="tab-pane active" id="arguments_get_response"><h2>HTTP status code <a href="http://httpstatus.es/100" target="_blank">100</a></h2><h3>Body</h3><p><strong>Media type</strong>: application/json</p><p><strong>Type</strong>: object</p></div></div></div></div></div></div></div></div></div></div><div class="panel panel-default"><div class="panel-heading"><h3 id="homepage" class="panel-title">/homepage</h3></div><div class="panel-body"><div class="panel-group"><div class="panel panel-white resource-modal"><div class="panel-heading"><h4 class="panel-title"><a class="collapsed" data-toggle="collapse" href="#panel_homepage"><span class="parent"></span>/homepage</a> <span class="methods"><a href="#homepage_post"><span class="badge badge_post">post</span></a></span></h4></div><div id="panel_homepage" class="panel-collapse collapse"><div class="panel-body"><div class="list-group"><div onclick="window.location.href = '#homepage_post'" class="list-group-item"><span class="badge badge_post">post</span><div class="method_description"></div><div class="clearfix"></div></div></div></div></div><div class="modal fade" tabindex="0" id="homepage_post"><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button><h4 class="modal-title" id="myModalLabel"><span class="badge badge_post">post</span> <span class="parent"></span>/homepage</h4></div><div class="modal-body"><ul class="nav nav-tabs"><li class="active"><a href="#homepage_post_request" data-toggle="tab">Request</a></li></ul><div class="tab-content"><div class="tab-pane active" id="homepage_post_request"><h3>Body</h3><p><strong>Media type</strong>: application/json</p><p><strong>Type</strong>: object</p><strong>Properties</strong><ul><li><strong>username</strong>: <em>required (string)</em></li><li><strong>password</strong>: <em>required (string)</em></li></ul><p><strong>Example</strong>:</p><div class="examples"><pre><code>{
"username": "jsmith",
"password": "allstar"
}
</code></pre></div></div></div></div></div></div></div></div></div></div></div><div class="panel panel-default"><div class="panel-heading"><h3 id="getbyname" class="panel-title">/getByName</h3></div><div class="panel-body"><div class="panel-group"><div class="panel panel-white resource-modal"><div class="panel-heading"><h4 class="panel-title"><a class="collapsed" data-toggle="collapse" href="#panel_getbyname"><span class="parent"></span>/getByName</a> <span class="methods"><a href="#getbyname_get"><span class="badge badge_get">get</span></a></span></h4></div><div id="panel_getbyname" class="panel-collapse collapse"><div class="panel-body"><div class="list-group"><div onclick="window.location.href = '#getbyname_get'" class="list-group-item"><span class="badge badge_get">get</span><div class="method_description"></div><div class="clearfix"></div></div></div></div></div><div class="modal fade" tabindex="0" id="getbyname_get"><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button><h4 class="modal-title" id="myModalLabel"><span class="badge badge_get">get</span> <span class="parent"></span>/getByName</h4></div><div class="modal-body"><ul class="nav nav-tabs"><li class="active"><a href="#getbyname_get_request" data-toggle="tab">Request</a></li></ul><div class="tab-content"><div class="tab-pane active" id="getbyname_get_request"><h3>Body</h3><p><strong>Media type</strong>: application/json</p><p><strong>Type</strong>: object</p><strong>Properties</strong><ul><li><strong>username</strong>: <em>required (string)</em></li><li><strong>password</strong>: <em>required (string)</em></li></ul><p><strong>Example</strong>:</p><div class="examples"><pre><code>{
"username": "jsmith",
"password": "allstar"
}
</code></pre></div></div></div></div></div></div></div></div><div class="panel panel-white resource-modal"><div class="panel-heading"><h4 class="panel-title"><a class="collapsed" data-toggle="collapse" href="#panel_getbyname_getbyid"><span class="parent">/getByName</span>/getByID</a> <span class="methods"><a href="#getbyname_getbyid_get"><span class="badge badge_get">get</span></a></span></h4></div><div id="panel_getbyname_getbyid" class="panel-collapse collapse"><div class="panel-body"><div class="list-group"><div onclick="window.location.href = '#getbyname_getbyid_get'" class="list-group-item"><span class="badge badge_get">get</span><div class="method_description"></div><div class="clearfix"></div></div></div></div></div><div class="modal fade" tabindex="0" id="getbyname_getbyid_get"><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button><h4 class="modal-title" id="myModalLabel"><span class="badge badge_get">get</span> <span class="parent">/getByName</span>/getByID</h4></div><div class="modal-body"><ul class="nav nav-tabs"><li class="active"><a href="#getbyname_getbyid_get_request" data-toggle="tab">Request</a></li></ul><div class="tab-content"><div class="tab-pane active" id="getbyname_getbyid_get_request"><h3>Body</h3><p><strong>Media type</strong>: application/json</p><p><strong>Type</strong>: object</p><strong>Properties</strong><ul><li><strong>username</strong>: <em>required (string)</em></li><li><strong>password</strong>: <em>required (string)</em></li></ul><p><strong>Example</strong>:</p><div class="examples"><pre><code>{
"username": "jsmith",
"password": "allstar"
}
</code></pre></div></div></div></div></div></div></div></div><div class="panel panel-white resource-modal"><div class="panel-heading"><h4 class="panel-title"><a class="collapsed" data-toggle="collapse" href="#panel_getbyname_createuser"><span class="parent">/getByName</span>/createUser</a> <span class="methods"><a href="#getbyname_createuser_post"><span class="badge badge_post">post</span></a></span></h4></div><div id="panel_getbyname_createuser" class="panel-collapse collapse"><div class="panel-body"><div class="list-group"><div onclick="window.location.href = '#getbyname_createuser_post'" class="list-group-item"><span class="badge badge_post">post</span><div class="method_description"></div><div class="clearfix"></div></div></div></div></div><div class="modal fade" tabindex="0" id="getbyname_createuser_post"><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button><h4 class="modal-title" id="myModalLabel"><span class="badge badge_post">post</span> <span class="parent">/getByName</span>/createUser</h4></div><div class="modal-body"><ul class="nav nav-tabs"><li class="active"><a href="#getbyname_createuser_post_request" data-toggle="tab">Request</a></li></ul><div class="tab-content"><div class="tab-pane active" id="getbyname_createuser_post_request"><h3>Body</h3><p><strong>Media type</strong>: application/json</p><p><strong>Type</strong>: object</p><strong>Properties</strong><ul><li><strong>username</strong>: <em>required (string)</em></li><li><strong>password</strong>: <em>required (string)</em></li></ul><p><strong>Example</strong>:</p><div class="examples"><pre><code>{
"username": "jsmith",
"password": "ece"
}
</code></pre></div></div></div></div></div></div></div></div><div class="panel panel-white resource-modal"><div class="panel-heading"><h4 class="panel-title"><a class="collapsed" data-toggle="collapse" href="#panel_getbyname_createsequence"><span class="parent">/getByName</span>/createSequence</a> <span class="methods"><a href="#getbyname_createsequence_post"><span class="badge badge_post">post</span></a></span></h4></div><div id="panel_getbyname_createsequence" class="panel-collapse collapse"><div class="panel-body"><div class="list-group"><div onclick="window.location.href = '#getbyname_createsequence_post'" class="list-group-item"><span class="badge badge_post">post</span><div class="method_description"></div><div class="clearfix"></div></div></div></div></div><div class="modal fade" tabindex="0" id="getbyname_createsequence_post"><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button><h4 class="modal-title" id="myModalLabel"><span class="badge badge_post">post</span> <span class="parent">/getByName</span>/createSequence</h4></div><div class="modal-body"><ul class="nav nav-tabs"><li class="active"><a href="#getbyname_createsequence_post_request" data-toggle="tab">Request</a></li></ul><div class="tab-content"><div class="tab-pane active" id="getbyname_createsequence_post_request"><h3>Body</h3><p><strong>Media type</strong>: application/json</p><p><strong>Type</strong>: object</p><strong>Properties</strong><ul><li><strong>username</strong>: <em>required (string)</em></li><li><strong>password</strong>: <em>required (string)</em></li><li><strong>objectName</strong>: <em>required (string)</em></li><li><strong>sequence</strong>: <em>required (string)</em></li></ul><p><strong>Example</strong>:</p><div class="examples"><pre><code>{
"username": "jsmith",
"password": "asdf",
"objectName": "Test Sequence",
"sequence": "ata"
}
</code></pre></div></div></div></div></div></div></div></div><div class="panel panel-white resource-modal"><div class="panel-heading"><h4 class="panel-title"><a class="collapsed" data-toggle="collapse" href="#panel_getbyname_createsequence_createpart"><span class="parent">/getByName/createSequence</span>/createPart</a> <span class="methods"><a href="#getbyname_createsequence_createpart_post"><span class="badge badge_post">post</span></a></span></h4></div><div id="panel_getbyname_createsequence_createpart" class="panel-collapse collapse"><div class="panel-body"><div class="list-group"><div onclick="window.location.href = '#getbyname_createsequence_createpart_post'" class="list-group-item"><span class="badge badge_post">post</span><div class="method_description"></div><div class="clearfix"></div></div></div></div></div><div class="modal fade" tabindex="0" id="getbyname_createsequence_createpart_post"><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button><h4 class="modal-title" id="myModalLabel"><span class="badge badge_post">post</span> <span class="parent">/getByName/createSequence</span>/createPart</h4></div><div class="modal-body"><ul class="nav nav-tabs"><li class="active"><a href="#getbyname_createsequence_createpart_post_request" data-toggle="tab">Request</a></li></ul><div class="tab-content"><div class="tab-pane active" id="getbyname_createsequence_createpart_post_request"><h3>Body</h3><p><strong>Media type</strong>: application/json</p><p><strong>Type</strong>: object</p><strong>Properties</strong><ul><li><strong>username</strong>: <em>required (string)</em></li><li><strong>password</strong>: <em>required (string)</em></li><li><strong>objectName</strong>: <em>required (string)</em></li><li><strong>seqId</strong>: <em>required (number)</em></li></ul><p><strong>Example</strong>:</p><div class="examples"><pre><code>{
"username": "jsmith",
"password": "overwatch",
"objectName": "Test Part",
"seqId": 321
}
</code></pre></div></div></div></div></div></div></div></div><div class="panel panel-white resource-modal"><div class="panel-heading"><h4 class="panel-title"><a class="collapsed" data-toggle="collapse" href="#panel_getbyname_createsequence_createconveniencepart"><span class="parent">/getByName/createSequence</span>/createConveniencePart</a> <span class="methods"><a href="#getbyname_createsequence_createconveniencepart_post"><span class="badge badge_post">post</span></a></span></h4></div><div id="panel_getbyname_createsequence_createconveniencepart" class="panel-collapse collapse"><div class="panel-body"><div class="list-group"><div onclick="window.location.href = '#getbyname_createsequence_createconveniencepart_post'" class="list-group-item"><span class="badge badge_post">post</span><div class="method_description"></div><div class="clearfix"></div></div></div></div></div><div class="modal fade" tabindex="0" id="getbyname_createsequence_createconveniencepart_post"><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button><h4 class="modal-title" id="myModalLabel"><span class="badge badge_post">post</span> <span class="parent">/getByName/createSequence</span>/createConveniencePart</h4></div><div class="modal-body"><ul class="nav nav-tabs"><li class="active"><a href="#getbyname_createsequence_createconveniencepart_post_request" data-toggle="tab">Request</a></li></ul><div class="tab-content"><div class="tab-pane active" id="getbyname_createsequence_createconveniencepart_post_request"><h3>Body</h3><p><strong>Media type</strong>: application/json</p><p><strong>Type</strong>: object</p><strong>Properties</strong><ul><li><strong>username</strong>: <em>required (string)</em></li><li><strong>objectName</strong>: <em>required (string)</em></li><li><strong>sequence</strong>: <em>required (string)</em></li><li><strong>roleSequence</strong>: <em>required (string)</em></li></ul><p><strong>Example</strong>:</p><div class="examples"><pre><code>{
"username": "jsmith",
"objectName": "Test Convenience Part",
"sequence": "tccctatcagtgatagagattgacatccctatcagtgatagagatac",
"roleSequence": "GENE"
}
</code></pre></div></div></div></div></div></div></div></div><div class="panel panel-white resource-modal"><div class="panel-heading"><h4 class="panel-title"><a class="collapsed" data-toggle="collapse" href="#panel_getbyname_createsequence_createconveniencedevice"><span class="parent">/getByName/createSequence</span>/createConvenienceDevice</a> <span class="methods"><a href="#getbyname_createsequence_createconveniencedevice_post"><span class="badge badge_post">post</span></a></span></h4></div><div id="panel_getbyname_createsequence_createconveniencedevice" class="panel-collapse collapse"><div class="panel-body"><div class="list-group"><div onclick="window.location.href = '#getbyname_createsequence_createconveniencedevice_post'" class="list-group-item"><span class="badge badge_post">post</span><div class="method_description"></div><div class="clearfix"></div></div></div></div></div><div class="modal fade" tabindex="0" id="getbyname_createsequence_createconveniencedevice_post"><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button><h4 class="modal-title" id="myModalLabel"><span class="badge badge_post">post</span> <span class="parent">/getByName/createSequence</span>/createConvenienceDevice</h4></div><div class="modal-body"><ul class="nav nav-tabs"><li class="active"><a href="#getbyname_createsequence_createconveniencedevice_post_request" data-toggle="tab">Request</a></li></ul><div class="tab-content"><div class="tab-pane active" id="getbyname_createsequence_createconveniencedevice_post_request"><h3>Body</h3><p><strong>Media type</strong>: application/json</p><p><strong>Type</strong>: object</p><strong>Properties</strong><ul><li><strong>username</strong>: <em>required (string)</em></li><li><strong>objectName</strong>: <em>required (string)</em></li><li><strong>sequence</strong>: <em>required (string)</em></li><li><strong>roleSequence</strong>: <em>required (string)</em></li></ul><p><strong>Example</strong>:</p><div class="examples"><pre><code>{
"username": "jsmith",
"objectName": "Test Convenience Device",
"sequence": "actacttcgcatcatgttcatca",
"roleSequence": "GENE"
}
</code></pre></div></div></div></div></div></div></div></div><div class="panel panel-white resource-modal"><div class="panel-heading"><h4 class="panel-title"><a class="collapsed" data-toggle="collapse" href="#panel_getbyname_createsequence_createconveniencedevice_set"><span class="parent">/getByName/createSequence/createConvenienceDevice</span>/set</a> <span class="methods"><a href="#getbyname_createsequence_createconveniencedevice_set_put"><span class="badge badge_put">put</span></a></span></h4></div><div id="panel_getbyname_createsequence_createconveniencedevice_set" class="panel-collapse collapse"><div class="panel-body"><div class="list-group"><div onclick="window.location.href = '#getbyname_createsequence_createconveniencedevice_set_put'" class="list-group-item"><span class="badge badge_put">put</span><div class="method_description"></div><div class="clearfix"></div></div></div></div></div><div class="modal fade" tabindex="0" id="getbyname_createsequence_createconveniencedevice_set_put"><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button><h4 class="modal-title" id="myModalLabel"><span class="badge badge_put">put</span> <span class="parent">/getByName/createSequence/createConvenienceDevice</span>/set</h4></div><div class="modal-body"><ul class="nav nav-tabs"><li class="active"><a href="#getbyname_createsequence_createconveniencedevice_set_put_request" data-toggle="tab">Request</a></li></ul><div class="tab-content"><div class="tab-pane active" id="getbyname_createsequence_createconveniencedevice_set_put_request"><h3>Body</h3><p><strong>Media type</strong>: application/json</p><p><strong>Type</strong>: object</p><strong>Properties</strong><ul><li><strong>username</strong>: <em>required (string)</em></li><li><strong>password</strong>: <em>required (string)</em></li><li><strong>primaryEmail</strong>: <em>required (string)</em></li><li><strong>id</strong>: <em>required (number)</em></li></ul><p><strong>Example</strong>:</p><div class="examples"><pre><code>{
"username": "jsmith",
"password": "asdfasdf",
"primaryEmail": "[email protected]",
"id": 232422526
}
</code></pre></div></div></div></div></div></div></div></div><div class="panel panel-white resource-modal"><div class="panel-heading"><h4 class="panel-title"><a class="collapsed" data-toggle="collapse" href="#panel_getbyname_createsequence_delete"><span class="parent">/getByName/createSequence</span>/delete</a> <span class="methods"><a href="#getbyname_createsequence_delete_delete"><span class="badge badge_delete">delete</span></a></span></h4></div><div id="panel_getbyname_createsequence_delete" class="panel-collapse collapse"><div class="panel-body"><div class="list-group"><div onclick="window.location.href = '#getbyname_createsequence_delete_delete'" class="list-group-item"><span class="badge badge_delete">delete</span><div class="method_description"></div><div class="clearfix"></div></div></div></div></div><div class="modal fade" tabindex="0" id="getbyname_createsequence_delete_delete"><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button><h4 class="modal-title" id="myModalLabel"><span class="badge badge_delete">delete</span> <span class="parent">/getByName/createSequence</span>/delete</h4></div><div class="modal-body"><ul class="nav nav-tabs"><li class="active"><a href="#getbyname_createsequence_delete_delete_request" data-toggle="tab">Request</a></li></ul><div class="tab-content"><div class="tab-pane active" id="getbyname_createsequence_delete_delete_request"><h3>Body</h3><p><strong>Media type</strong>: application/json</p><p><strong>Type</strong>: object</p><strong>Properties</strong><ul><li><strong>username</strong>: <em>required (string)</em></li><li><strong>password</strong>: <em>required (string)</em></li><li><strong>id</strong>: <em>required (number)</em></li></ul><p><strong>Example</strong>:</p><div class="examples"><pre><code>{
"username": "jsmith",
"password": "mcga",
"id": 123321123
}
</code></pre></div></div></div></div></div></div></div></div></div></div></div></div><div class="col-md-3"><div id="sidebar" class="hidden-print affix" role="complementary"><ul class="nav nav-pills nav-stacked"><li><a href="#arguments">/arguments</a></li><li><a href="#homepage">/homepage</a></li><li><a href="#getbyname">/getByName</a></li></ul></div></div></div></div></body></html>