centos-ci.yml

name: CentOS CI

on:
  push:
  pull_request:
    branches:
      - master

concurrency:
  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
  cancel-in-progress: true

jobs:
  build:
    runs-on: ubuntu-latest
    container:
      image: centos:7

    steps:
    - name: Install dependencies
      run: |
        yum -y update
        yum -y install centos-release-scl epel-release
        yum -y install man wget environment-modules libXt-devel libXext-devel ninja-build make \
          devtoolset-10-gcc* numactl-devel openmpi3-devel freeglut-devel \
          scl-utils which xorg-x11-server-Xvfb fontconfig mesa-dri-drivers
        yum -y install @development zlib-devel bzip2 bzip2-devel readline-devel sqlite \
          sqlite-devel openssl-devel xz xz-devel libffi-devel findutils lapack-devel blas-devel
        yum -y remove git*
        yum -y install https://packages.endpointdev.com/rhel/7/os/x86_64/endpoint-repo-1.10-1.x86_64.rpm
        yum -y install git
        curl -L -O https://github.com/Kitware/CMake/releases/download/v3.19.3/cmake-3.19.3-Linux-x86_64.sh
        chmod +x cmake-3.19.3-Linux-x86_64.sh
        ./cmake-3.19.3-Linux-x86_64.sh --skip-license --prefix=/usr/local
        
    - name: Start Xvfb
      run: |
        set -e
        yum -y install xorg-x11-server-Xvfb
        XVFBARGS=":99 -ac -screen 0 2560x1440x24"
        /usr/bin/Xvfb $XVFBARGS >> /tmp/Xvfb.out 2>&1 &
        disown -ar
        sleep 3

    - name: Set OSVERS
      run: |
        ID=$(grep -oP '(?<=^ID=).+' /etc/os-release | tr -d '"')
        VERSION=$(grep -oP '(?<=^VERSION_ID=).+' /etc/os-release | tr -d '"')
        echo "OSVERS=$ID-$VERSION" >> $GITHUB_ENV

    - name: Cache pyenv
      uses: actions/cache@v2
      id: pyenv-cache
      with:
        path: ~/.pyenv
        key: ${{ env.OSVERS }}-pyenv-3.9.1

    - name: Install pyenv dependency
      if: steps.pyenv-cache.outputs.cache-hit != 'true'
      run: |
        if [ ! -f "$HOME/.pyenv/bin/pyenv" ]; then
          curl https://pyenv.run | bash
        fi
        export PATH="$HOME/.pyenv/bin:$PATH"
        eval "$(pyenv init --path)"
        eval "$(pyenv init -)"
        PYTHON_CONFIGURE_OPTS="--enable-shared" pyenv install 3.9.1
        pyenv shell 3.9.1

    - name: Checkout BioDynaMo
      uses: actions/checkout@v3
      with:
        fetch-depth: 0

    - name: Cache Third Party Packages
      uses: actions/cache@v2
      with:
        path: build/third_party
        key: ${{ env.OSVERS }}-third-party-${{ hashFiles('cmake/external/SHA256Digests.cmake') }}

    - name: Build BioDynaMo
      shell: bash
      run: |
        export PATH="$HOME/.pyenv/bin:$PATH"
        eval "$(pyenv init --path)"
        eval "$(pyenv init -)"
        pyenv shell 3.9.1
        . scl_source enable devtoolset-10 || true
        . /etc/profile.d/modules.sh || true
        module load mpi
        cmake -G Ninja \
          -Dparaview=ON \
          -Dbenchmark=ON \
          -Dlibgit2=ON \
          -Dnuma=OFF \
          -DCMAKE_BUILD_TYPE=Release \
          -B build
        cmake --build build --parallel --config Release

    - name: Unit tests BioDynaMo
      shell: bash
      working-directory: build
      run: |
        . bin/thisbdm.sh
        bdm config
        export DISPLAY=:99.0
        sleep 3
        ninja run-unit-tests